.. stelaro documentation master file, created by
   sphinx-quickstart on Sun Oct 13 23:00:23 2024.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

stelaro
=======

``stelaro`` is a toolbox for analyzing genomic data, with a focus on metagenomics and phylogenomics.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   user_guide
   developer_guide
   source-code-documentation
   literature_review
   benchmarks


Improve upon the following software solutions:

- Cytoscape - network analysis (massive data, metagenomics, ...)
- Avoid contamination (https://pmc.ncbi.nlm.nih.gov/articles/PMC10653788/)
- Train for specific datasets
-



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`